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2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836073, updated on 18-Sep-2024

Summary

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Official Full Name
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Primary source
TAIR:AT5G59540
Locus tag
AT5G59540
See related
Araport:AT5G59540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2O15.6; F2O15_6
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (23995850..23997821, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ROTUNDIFOLIA like 5 Neighboring gene ZRT/IRT-like protein 2 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene zinc finger (C3HC4-type RING finger) family protein Neighboring gene sensitivity to red light reduced protein (SRR1)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_001037027.1
NM_125346.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NP_001032104.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 7263 Blast hits to 7229 proteins in 962 species: Archae - 0; Bacteria - 1031; Metazoa - 70; Fungi - 654; Plants - 4685; Viruses - 0; Other Eukaryotes - 823 (source: NCBI BLink).
NP_200762.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23995850..23997821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125346.3 → NP_200762.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200762.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V2X0, Q9LTH7
    UniProtKB/TrEMBL
    A0A5S9YHU7, A0A654GCI0
    Conserved Domains (1) summary
    PLN02393
    Location:25 → 361
    PLN02393; leucoanthocyanidin dioxygenase like protein

  2. NM_001037027.1 → NP_001032104.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032104.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LTH7
    Conserved Domains (2) summary
    pfam03171
    Location:218 → 284
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    pfam14226
    Location:61 → 173
    DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LTH7.1

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