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transcription factor-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836041, updated on 18-Sep-2024

Summary

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Official Full Name
transcription factor-like protein
Primary source
TAIR:AT5G59230
Locus tag
AT5G59230
See related
Araport:AT5G59230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNC17.14; MNC17_14
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23901520..23902481)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene PP2C protein (Clade A protein phosphatases type 2C) Neighboring gene ncRNA Neighboring gene Ribosomal protein S8e family protein Neighboring gene Major facilitator superfamily protein Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis DREAM complex antagonizes WDR5A to modulate histone H3K4me2/3 deposition for a subset of genome repression. Wang Y, et al. Proc Natl Acad Sci U S A, 2022 Jul 5. PMID 35759663, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of transcription factor TFIIA complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription factor-like protein
NP_200731.1
  • transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23901520..23902481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125313.2 → NP_200731.1  transcription factor-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200731.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U702, A0A7G2FI95, Q9FIF4
    Conserved Domains (1) summary
    cd07976
    Location:8 → 186
    TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins
Nucleotide Protein
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