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RABA2D RAB GTPase homolog A2D [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836033, updated on 18-Sep-2024

Summary

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Official Symbol
RABA2D
Official Full Name
RAB GTPase homolog A2D
Primary source
TAIR:AT5G59150
Locus tag
AT5G59150
See related
Araport:AT5G59150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS RAB GTPASE HOMOLOG A2D; ATRAB-A2D; ATRABA2D; MNC17.6; MNC17_6; RAB GTPase homolog A2D
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Genomic context

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See RABA2D in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (23876486..23878489)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Subtilase family protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene type one serine/threonine protein phosphatase 2 Neighboring gene Proline-rich extensin-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rab-A2 and Rab-A3 GTPases define a trans-golgi endosomal membrane domain in Arabidopsis that contributes substantially to the cell plate. Chow CM, et al. Plant Cell, 2008 Jan. PMID 18239134, Free PMC Article
  2. Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana. Lunn D, et al. PLoS One, 2013. PMID 24124508, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Involved in determining the composition of the cell wall, particularly with respect to cellulose content, possibly through regulating trafficking of cellulose synthase. [RABA2D]
    Title: Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001345338.1
NM_125305.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell wall biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cell plate IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
RAB GTPase homolog A2D
NP_200723.1
  • RAB GTPase homolog A2D (RABA2D); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2C (TAIR:AT3G46830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23876486..23878489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125305.5 → NP_200723.1  RAB GTPase homolog A2D [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200723.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIF9
    UniProtKB/TrEMBL
    A0A178U8X7, A0A5S9YGI6
    Conserved Domains (1) summary
    PLN03110
    Location:1 → 217
    PLN03110; Rab GTPase; Provisional

  2. NM_001345338.1 → NP_001330077.1  RAB GTPase homolog A2D [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B9N4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIF9.1

Gene LinkOut

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