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cPT6 Undecaprenyl pyrophosphate synthetase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835993, updated on 18-Sep-2024

Summary

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Official Symbol
cPT6
Official Full Name
Undecaprenyl pyrophosphate synthetase family protein
Primary source
TAIR:AT5G58782
Locus tag
AT5G58782
See related
Araport:AT5G58782
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtcPT6; cis-prenyltransferase 6
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Genomic context

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See cPT6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23738099..23739587, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene damaged DNA binding 2 Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of dehydrodolichyl diphosphate synthase of Arabidopsis thaliana, a key enzyme in dolichol biosynthesis. Cunillera N, et al. FEBS Lett, 2000 Jul 21. PMID 10908715
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125266.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables dehydrodolichyl diphosphate synthase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables transferase activity, transferring alkyl or aryl (other than methyl) groups IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within dolichol biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Undecaprenyl pyrophosphate synthetase family protein
NP_568883.1
  • Undecaprenyl pyrophosphate synthetase family protein; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: ovule, embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: Undecaprenyl pyrophosphate synthetase family protein (TAIR:AT5G58780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23738099..23739587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345322.1 → NP_001332129.1  Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG36, A0A654GCP9

  2. NM_125266.4 → NP_568883.1  Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568883.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GY03, Q8LFW9, Q9LUY2
    UniProtKB/TrEMBL
    A0A654GCP9
    Conserved Domains (1) summary
    cd00475
    Location:60 → 280
    Cis_IPPS; Cis (Z)-Isoprenyl Diphosphate Synthases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GY03.1

Gene LinkOut

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