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HEAT/U-box domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835954, updated on 18-Sep-2024

Summary

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Official Full Name
HEAT/U-box domain-containing protein
Primary source
TAIR:AT5G58410
Locus tag
AT5G58410
See related
Araport:AT5G58410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MCK7.28; MCK7_28
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Sequence:
Chromosome: 5; NC_003076.8 (23609376..23617599)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene Putative membrane lipoprotein Neighboring gene Ribosomal protein S4 (RPS4A) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_125227.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in ribosome-associated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RQC complex IEA
Inferred from Electronic Annotation
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HEAT/U-box domain-containing protein
NP_200649.1
  • HEAT/U-box domain-containing protein; FUNCTIONS IN: binding, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23609376..23617599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345300.1 → NP_001331639.1  HEAT/U-box domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9A2, A0A1P8BEG9, A0A5S9YFB5
    Conserved Domains (1) summary
    COG5219
    Location:1651 → 1858
    COG5219; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

  2. NM_125227.2 → NP_200649.1  HEAT/U-box domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200649.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FGI1
    UniProtKB/TrEMBL
    A0A654GCL2
    Conserved Domains (1) summary
    pfam13639
    Location:1821 → 1869
    zf-RING_2; Ring finger domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FGI1.1

Gene LinkOut

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