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RPT3 regulatory particle triple-A ATPase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835941, updated on 18-Sep-2024

Summary

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Official Symbol
RPT3
Official Full Name
regulatory particle triple-A ATPase 3
Primary source
TAIR:AT5G58290
Locus tag
AT5G58290
See related
Araport:AT5G58290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
26S PROTEASOME AAA-ATPASE SUBUNIT RPT3; MCK7.16; MCK7_16; regulatory particle triple-A ATPase 3
Summary
26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA
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Genomic context

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See RPT3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (23569052..23571854)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor Neighboring gene ABC transporter of the mitochondrion 3 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene methyl esterase 18 Neighboring gene ncRNA Neighboring gene Kinase interacting (KIP1-like) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A mutation in the Proteosomal Regulatory Particle AAA-ATPase-3 in Arabidopsis impairs the light-specific hypocotyl elongation response elicited by a glutamate receptor agonist, BMAA. Brenner ED, et al. Plant Mol Biol, 2009 Jul. PMID 19412571
  2. Proteomics analysis reveals a highly heterogeneous proteasome composition and the post-translational regulation of peptidase activity under pathogen signaling in plants. Sun HH, et al. J Proteome Res, 2013 Nov 1. PMID 23991809
  3. Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome. Fu H, et al. Plant J, 1999 Jun. PMID 10417703
  4. A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Glickman MH, et al. Cell, 1998 Sep 4. PMID 9741626
  5. Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. Fu H, et al. EMBO J, 2001 Dec 17. PMID 11742986, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The mutation in bim409 was identified to be in a gene encoding the Proteosomal Regulatory Particle AAA-ATPase-3 (RPT3).
    Title: A mutation in the Proteosomal Regulatory Particle AAA-ATPase-3 in Arabidopsis impairs the light-specific hypocotyl elongation response elicited by a glutamate receptor agonist, BMAA.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_125214.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus TAS
Traceable Author Statement
more info
 PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 
part_of proteasome complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
regulatory particle triple-A ATPase 3
NP_200637.1
  • regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23569052..23571854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125214.6 → NP_200637.1  regulatory particle triple-A ATPase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200637.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5PNS4, Q9SEI4
    UniProtKB/TrEMBL
    A0A178UAH2, A0A5S9YHH8, A0A7G2FH31
    Conserved Domains (1) summary
    PTZ00454
    Location:15 → 408
    PTZ00454; 26S protease regulatory subunit 6B-like protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SEI4.1

Gene LinkOut

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