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NdhN oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835938, updated on 18-Sep-2024

Summary

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Official Symbol
NdhN
Official Full Name
oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
Primary source
TAIR:AT5G58260
Locus tag
AT5G58260
See related
Araport:AT5G58260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MCK7.13; MCK7_13; NADH dehydrogenase-like complex N; NDH-N
Summary
Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
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Genomic context

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See NdhN in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23560568..23562001, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene transthyretin-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene FRAGILE HISTIDINE TRIAD Neighboring gene YCF54 Neighboring gene ABC transporter of the mitochondrion 3 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene regulatory particle triple-A ATPase 3 Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. New subunits NDH-M, -N, and -O, encoded by nuclear genes, are essential for plastid Ndh complex functioning in higher plants. Rumeau D, et al. Plant Cell, 2005 Jan. PMID 15608332, Free PMC Article
  2. Multistep assembly of chloroplast NADH dehydrogenase-like subcomplex A requires several nucleus-encoded proteins, including CRR41 and CRR42, in Arabidopsis. Peng L, et al. Plant Cell, 2012 Jan. PMID 22274627, Free PMC Article
  3. Proteomics of the response of Arabidopsis thaliana to infection with Alternaria brassicicola. Mukherjee AK, et al. J Proteomics, 2010 Feb 10. PMID 19857612
  4. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
  5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001125985.1
NM_125211.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within NADH dehydrogenase complex (plastoquinone) assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within defense response to fungus IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of NAD(P)H dehydrogenase complex (plastoquinone) TAS
Traceable Author Statement
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast envelope HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in chloroplast thylakoid membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
NP_001119457.1
  • oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: defense response to fungus, incompatible interaction, NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase, subunit N (InterPro:IPR020874); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_200634.1
  • oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: defense response to fungus, incompatible interaction, NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), chloroplast envelope; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase, subunit N (InterPro:IPR020874); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23560568..23562001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125211.4 → NP_200634.1  oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200634.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H5R4, Q9LVM2
    UniProtKB/TrEMBL
    A0A178UG88, A0A5S9YFL5
    Conserved Domains (1) summary
    pfam11909
    Location:63 → 201
    NdhN; NADH-quinone oxidoreductase cyanobacterial subunit N

  2. NM_001125985.1 → NP_001119457.1  oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119457.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVM2
    Conserved Domains (1) summary
    pfam11909
    Location:63 → 163
    NdhN; NADH-quinone oxidoreductase cyanobacterial subunit N
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVM2.1

Gene LinkOut

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