Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Full Name: Cytochrome c oxidase, subunit Vib family protein
Primary source: TAIR:AT5G58005
Locus tag: AT5G58005
See related: Araport:AT5G58005
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 4

Sequence:: Chromosome: 5; NC_003076.8 (23482179..23483277)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Orthologs from OrthoDB

NM_001037015.1

Supported by ESTs:

NM_148148.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in cytosol	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
part_of respiratory chain complex IV	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: Cytochrome c oxidase, subunit Vib family protein

NP_001032092.1

Cytochrome c oxidase, subunit Vib family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); Has 136 Blast hits to 136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 38; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NP_680453.1

Cytochrome c oxidase, subunit Vib family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

23482179..23483277

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_148148.5 → NP_680453.1 Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_680453.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UFW9, Q8RXH9

Conserved Domains (1) summary

pfam02297
Location:23 → 86

COX6B; Cytochrome oxidase c subunit VIb
NM_001037015.1 → NP_001032092.1 Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001032092.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UFW9, Q8RXH9

Conserved Domains (1) summary

pfam02297
Location:23 → 86

COX6B; Cytochrome oxidase c subunit VIb