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SKIP1 SKP1 interacting partner 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835901, updated on 18-Sep-2024

Summary

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Official Symbol
SKIP1
Official Full Name
SKP1 interacting partner 1
Primary source
TAIR:AT5G57900
Locus tag
AT5G57900
See related
Araport:AT5G57900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MTI20.16; MTI20_16; SKP1 interacting partner 1
Summary
F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner
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Genomic context

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See SKIP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (23449694..23450933, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene multipolar spindle 1 Neighboring gene uncharacterized protein Neighboring gene Glutamine amidotransferase type 1 family protein Neighboring gene ncRNA Neighboring gene ribosomal RNA small subunit methyltransferase G Neighboring gene early nodulin-like protein 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plant WEE1 kinase is cell cycle regulated and removed at mitosis via the 26S proteasome machinery. Cook GS, et al. J Exp Bot, 2013 Apr. PMID 23536609, Free PMC Article
  2. SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. Farrás R, et al. EMBO J, 2001 Jun 1. PMID 11387208, Free PMC Article
  3. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_125175.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SKP1 interacting partner 1
NP_568870.1
  • SKP1 interacting partner 1 (SKIP1); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G30640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23449694..23450933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125175.2 → NP_568870.1  SKP1 interacting partner 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568870.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FDX1
    UniProtKB/TrEMBL
    A0A178UIF7, A0A5S9YF21, A0A654GC18
    Conserved Domains (2) summary
    cd09293
    Location:89 → 253
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:91 → 113
    LRR_AMN1; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FDX1.1

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