U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TCH4 Xyloglucan endotransglucosylase/hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835860, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
TCH4
Official Full Name
Xyloglucan endotransglucosylase/hydrolase family protein
Primary source
TAIR:AT5G57560
Locus tag
AT5G57560
See related
Araport:AT5G57560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUA2.13; MUA2_13; Touch 4; XTH22; xyloglucan endotransglucosylase/hydrolase 22; XYLOGLUCAN ENDOTRANSGLYCOSYLASE
Summary
Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TCH4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (23307006..23308680, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 13 Neighboring gene xyloglucan endotransglucosylase/hydrolase 25 Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Xyloglucan Endotransglucosylase/Hydrolase Gene XTH22/TCH4 Regulates Plant Growth by Disrupting the Cell Wall Homeostasis in Arabidopsis under Boron Deficiency. Zhang C, et al. Int J Mol Sci, 2022 Jan 23. PMID 35163179, Free PMC Article
  2. [Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter]. Zhang CQ, et al. Yi Chuan, 2008 May. PMID 18487153
  3. Cellular localization of Arabidopsis xyloglucan endotransglycosylase-related proteins during development and after wind stimulation. Antosiewicz DM, et al. Plant Physiol, 1997 Dec. PMID 9414546, Free PMC Article
  4. Cold-shock regulation of the Arabidopsis TCH genes and the effects of modulating intracellular calcium levels. Polisensky DH, et al. Plant Physiol, 1996 Aug. PMID 8756505, Free PMC Article
  5. Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycosylase. Xu W, et al. Plant Cell, 1995 Oct. PMID 7580251, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Xyloglucan Endotransglucosylase/Hydrolase Gene XTH22/TCH4 Regulates Plant Growth by Disrupting the Cell Wall Homeostasis in Arabidopsis under Boron Deficiency.
    Title: The Xyloglucan Endotransglucosylase/Hydrolase Gene XTH22/TCH4 Regulates Plant Growth by Disrupting the Cell Wall Homeostasis in Arabidopsis under Boron Deficiency.
  2. identified 9 transcriptional regulatory elements from TCH4 promoter by bioinformatics approach
    Title: [Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter].
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_125137.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
enables polysaccharide binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables xyloglucan:xyloglucosyl transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
acts_upstream_of_or_within plant-type cell wall organization TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to brassinosteroid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to mechanical stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Xyloglucan endotransglucosylase/hydrolase family protein
NP_200564.1
  • Touch 4 (TCH4); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 2219 Blast hits to 2201 proteins in 305 species: Archae - 0; Bacteria - 284; Metazoa - 0; Fungi - 458; Plants - 1386; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23307006..23308680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125137.4 → NP_200564.1  Xyloglucan endotransglucosylase/hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200564.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q38857, Q8H783
    UniProtKB/TrEMBL
    A0A178UQX4, A0A5S9YEY1
    Conserved Domains (1) summary
    cd02176
    Location:19 → 281
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q38857.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools