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nucleolar/coiled-body phosphoprotein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835816, updated on 18-Sep-2024

Summary

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Official Full Name
nucleolar/coiled-body phosphoprotein
Primary source
TAIR:AT5G57120
Locus tag
AT5G57120
See related
Araport:AT5G57120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUL3.6; MUL3_6
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (23122488..23124594, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene autoinhibited Ca2+ -ATPase Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001345243.1
NM_125094.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleolus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nucleolar/coiled-body phosphoprotein
NP_200522.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23122488..23124594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125094.3 → NP_200522.1  nucleolar/coiled-body phosphoprotein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200522.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMD7, Q8LFX8, Q9LU74
    Conserved Domains (2) summary
    smart00667
    Location:13 → 46
    LisH; Lissencephaly type-1-like homology motif
    pfam05022
    Location:253 → 323
    SRP40_C; SRP40, C-terminal domain

  2. NM_001345243.1 → NP_001332738.1  nucleolar/coiled-body phosphoprotein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1R7T3I7, A0A7G2FN28
Nucleotide Protein
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