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NAP1;3 nucleosome assembly protein 1;3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835797, updated on 18-Sep-2024

Summary

Official Symbol
NAP1;3
Official Full Name
nucleosome assembly protein 1;3
Primary source
TAIR:AT5G56950
Locus tag
AT5G56950
See related
Araport:AT5G56950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MHM17.6; MHM17_6; NFA03; NFA3; nucleosome assembly protein 1;3; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3
Summary
Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.
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Genomic context

See NAP1;3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (23032449..23035693)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CCCH-type zinc finger family protein Neighboring gene Ribosomal protein S16 family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding family protein Neighboring gene ncRNA Neighboring gene cytokinin oxidase 3

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_125077.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables histone binding IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 
located_in plastid HDA PubMed 

General protein information

Preferred Names
nucleosome assembly protein 1;3
NP_568844.1
  • nucleosome assembly protein 1;3 (NAP1;3); CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein1;1 (TAIR:AT4G26110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23032449..23035693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125077.4NP_568844.1  nucleosome assembly protein 1;3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568844.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94K07, Q9LTS5
    UniProtKB/TrEMBL
    A0A178U9L9, A0A5S9YFD9, A0A654GBS2
    Conserved Domains (1) summary
    pfam00956
    Location:53297
    NAP; Nucleosome assembly protein (NAP)