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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835787, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT5G56850
Locus tag
AT5G56850
See related
Araport:AT5G56850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MIK19.5; MIK19_5
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (22985115..22988110, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene myb-like transcription factor family protein Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001345218.1
NM_001345219.1
NM_001345220.1
NM_001345221.1
NM_001345222.1
NM_001345223.1
NM_125068.4
NM_203215.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_001318815.1
  • unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_200496.2
  • unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22985115..22988110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125068.4 → NP_200496.2  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200496.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9D4, A0A654GBR3, F4K940

  2. NM_001345219.1 → NP_001332288.1  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9D4, A0A1P8BGF9

  3. NM_001345218.1 → NP_001318815.1  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAY7, Q9FJS8

  4. NM_001345220.1 → NP_001332284.1  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9D4, A0A654GBR3, F4K940

  5. NM_001345221.1 → NP_001332285.1  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAY7, Q9FJS8

  6. NM_001345223.1 → NP_001332287.1  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9D4, A0A1P8BGH5

  7. NM_001345222.1 → NP_001332286.1  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9D4, A0A1P8BGG6

  8. NM_203215.1 → NP_974944.1  uncharacterized protein AT5G56850 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974944.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAY7, Q9FJS8
Nucleotide Protein
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