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PSL4 calmodulin-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835736, updated on 18-Sep-2024

Summary

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Official Symbol
PSL4
Official Full Name
calmodulin-binding protein
Primary source
TAIR:AT5G56360
Locus tag
AT5G56360
See related
Araport:AT5G56360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MCD7.9; MCD7_9; PRIORITY IN SWEET LIFE 4
Summary
Encodes PSL4, beta-subunit of endoplasmic reticulum-resident glucosidase II, which is essential for stable accumulation and quality control of the elf18 receptor EFR but not the flg22 receptor FLS2.
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Genomic context

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See PSL4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Sequence:
Chromosome: 5; NC_003076.8 (22823189..22828062, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Pyruvate kinase family protein Neighboring gene tRNA-Ile Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Uncoupling of sustained MAMP receptor signaling from early outputs in an Arabidopsis endoplasmic reticulum glucosidase II allele. Lu X, et al. Proc Natl Acad Sci U S A, 2009 Dec 29. PMID 20007779, Free PMC Article
  2. Genes encoding calmodulin-binding proteins in the Arabidopsis genome. Reddy VS, et al. J Biol Chem, 2002 Mar 22. PMID 11782485
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125019.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
calmodulin-binding protein
NP_568840.3
  • PRIORITY IN SWEET LIFE 4 (PSL4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011); BEST Arabidopsis thaliana protein match is: protein kinase C substrate, heavy chain-related (TAIR:AT2G42390.1); Has 58797 Blast hits to 35699 proteins in 2008 species: Archae - 449; Bacteria - 9679; Metazoa - 21420; Fungi - 7377; Plants - 2361; Viruses - 398; Other Eukaryotes - 17113 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22823189..22828062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125019.5 → NP_568840.3  calmodulin-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568840.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LDD0, Q9FM96
    UniProtKB/TrEMBL
    A0A5S9YEH7
    Conserved Domains (3) summary
    pfam12999
    Location:35 → 182
    PRKCSH-like; Glucosidase II beta subunit-like
    cl06793
    Location:489 → 627
    PRKCSH; Glucosidase II beta subunit-like protein
    cl11433
    Location:143 → 203
    DivIC; Septum formation initiator
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FM96.1

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