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Leucine-rich receptor-like protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835702, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich receptor-like protein kinase family protein
Primary source
TAIR:AT5G56040
Locus tag
AT5G56040
See related
Araport:AT5G56040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDA7.8; MDA7_8; SKM2; STERILITY-REGULATING KINASE MEMBER 2
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (22694823..22698645)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Got1/Sft2-like vescicle transport protein family Neighboring gene heat shock protein 81-2 Neighboring gene late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein Neighboring gene ATP-binding protein, putative (DUF2431)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel pollen-pistil interaction conferring high-temperature tolerance during reproduction via CLE45 signaling. Endo S, et al. Curr Biol, 2013 Sep 9. PMID 23910659
  2. RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana. Ou Y, et al. Cell Res, 2016 Jun. PMID 27229312, Free PMC Article
  3. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
  4. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  5. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001037003.2
NM_124986.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables peptide receptor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of root meristem growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to temperature stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich receptor-like protein kinase family protein
NP_001032080.1
  • Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 231331 Blast hits to 125911 proteins in 4380 species: Archae - 141; Bacteria - 23597; Metazoa - 71861; Fungi - 8804; Plants - 101197; Viruses - 340; Other Eukaryotes - 25391 (source: NCBI BLink).
NP_200415.2
  • Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22694823..22698645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001037003.2 → NP_001032080.1  Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032080.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K6B8, Q0WLB3, Q8VYG7, Q9FKU3
    UniProtKB/TrEMBL
    A0A178U8R1, A0A5S9YFK1
    Conserved Domains (2) summary
    PLN00113
    Location:35 → 1038
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:315 → 338
    LRR_RI; leucine-rich repeat [structural motif]

  2. NM_124986.3 → NP_200415.2  Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200415.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YFK1
    Conserved Domains (5) summary
    cd00116
    Location:291 → 587
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:315 → 338
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:28 → 68
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam13855
    Location:313 → 373
    LRR_8; Leucine rich repeat
    cl21453
    Location:764 → 935
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4K6B8.1

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