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transmembrane protein C9orf5 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835694, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein C9orf5 protein
Primary source
TAIR:AT5G55960
Locus tag
AT5G55960
See related
Araport:AT5G55960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MYN21.7; MYN21_7
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (22662532..22665099)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene oligopeptide transporter 1 Neighboring gene Uncharacterized protein family (UPF0172) Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene RING/U-box superfamily protein Neighboring gene serine-rich protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_124978.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein C9orf5 protein
NP_568833.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22662532..22665099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124978.4 → NP_568833.1  transmembrane protein C9orf5 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568833.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UH08, A0A5S9YGR5, Q93XX1
    Conserved Domains (1) summary
    cl00465
    Location:417 → 646
    AI-2E_transport; AI-2E family transporter
Nucleotide Protein
Heading Accession and Version

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