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OPT1 oligopeptide transporter 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835691, updated on 18-Sep-2024

Summary

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Official Symbol
OPT1
Official Full Name
oligopeptide transporter 1
Primary source
TAIR:AT5G55930
Locus tag
AT5G55930
See related
Araport:AT5G55930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1; ATOPT1; MYN21.4; MYN21_4; oligopeptide transporter 1
Summary
oligopeptide transporter
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Genomic context

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See OPT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (22652715..22656106)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Sucrase/ferredoxin-like family protein Neighboring gene D6 protein kinase Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein family (UPF0172) Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene transmembrane protein C9orf5 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An oligopeptide transporter gene family in Arabidopsis. Koh S, et al. Plant Physiol, 2002 Jan. PMID 11788749, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124975.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables oligopeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables oligopeptide transmembrane transporter activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables oligopeptide transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within oligopeptide transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
oligopeptide transporter 1
NP_200404.1
  • oligopeptide transporter 1 (OPT1); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 5 (TAIR:AT4G26590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22652715..22656106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124975.4 → NP_200404.1  oligopeptide transporter 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200404.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FG72
    UniProtKB/TrEMBL
    A0A178U991, A0A5S9YEX8, A0A654GBM2
    Conserved Domains (1) summary
    TIGR00728
    Location:37 → 718
    OPT_sfam; oligopeptide transporter, OPT superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FG72.1

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