U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

WYR inner centromere protein, ARK-binding region protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835676, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
WYR
Official Full Name
inner centromere protein, ARK-binding region protein
Primary source
TAIR:AT5G55820
Locus tag
AT5G55820
See related
Araport:AT5G55820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDF20.26; MDF20_26; WYRD
Summary
Encodes a plant ortholog of the inner centromere protein (INCENP), which is implicated in the control of chromosome segregation and cytokinesis in yeast and animals. Required for female gametophytic cell specification and seed development.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See WYR in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (22586287..22594135)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene nicotinate/nicotinamide mononucleotide adenyltransferase Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Female gametophytic cell specification and seed development require the function of the putative Arabidopsis INCENP ortholog WYRD. Kirioukhova O, et al. Development, 2011 Aug. PMID 21752930
  2. Functional Analysis of the Plant Chromosomal Passenger Complex. Komaki S, et al. Plant Physiol, 2020 Aug. PMID 32461300, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. WYR encodes a putative Arabidopsis ortholog of the inner centromere protein (INCENP) and plays a role during both gametophytic differentiation and postfertilization development. [WYRD]
    Title: Female gametophytic cell specification and seed development require the function of the putative Arabidopsis INCENP ortholog WYRD.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help
NM_001345152.1
NM_001345153.1
NM_001345156.1
NM_001345157.1
NM_001345158.1
NM_001345159.1
NM_001345160.1
NM_001345161.1
NM_124964.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo sac development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within seed development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
inner centromere protein, ARK-binding region protein
NP_200393.1
  • CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22586287..22594135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345154.1 → NP_001331529.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE52, A0A654GBT6

  2. NM_001345155.1 → NP_001331530.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE61, A0A654GBT6

  3. NM_124964.1 → NP_200393.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200393.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FGF4, Q9FM57
    Conserved Domains (3) summary
    TIGR02794
    Location:1501 → 1678
    tolA_full; TolA protein
    pfam03941
    Location:1746 → 1777
    INCENP_ARK-bind; Inner centromere protein, ARK binding region
    cl23765
    Location:1602 → 1671
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  4. NM_001345156.1 → NP_001331531.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE57, A0A654GBT6

  5. NM_001345157.1 → NP_001331532.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE54, A0A7G2FGF4

  6. NM_001345158.1 → NP_001331533.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE62, A0A654GBT6

  7. NM_001345159.1 → NP_001331526.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE37, A0A654GBT6

  8. NM_001345160.1 → NP_001331527.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE37, A0A654GBT6

  9. NM_001345161.1 → NP_001331528.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FGF4, G3GBK1

  10. NM_001345152.1 → NP_001331524.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE82, A0A654GBT6

  11. NM_001345153.1 → NP_001331525.1  inner centromere protein, ARK-binding region protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE53, A0A7G2FGF4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.