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DEK domain-containing chromatin associated protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835660, updated on 18-Sep-2024

Summary

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Official Full Name
DEK domain-containing chromatin associated protein
Primary source
TAIR:AT5G55660
Locus tag
AT5G55660
See related
Araport:AT5G55660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDF20.10; MDF20_10
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (22538556..22543474)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Outward rectifying potassium channel protein Neighboring gene Na-translocating NADH-quinone reductase subunit A Neighboring gene uncharacterized protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene glycine-rich protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  4. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124948.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
DEK domain-containing chromatin associated protein
NP_200377.1
  • DEK domain-containing chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK domain-containing chromatin associated protein (TAIR:AT4G26630.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22538556..22543474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124948.4 → NP_200377.1  DEK domain-containing chromatin associated protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200377.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFC8, F4K4Y5, Q9FM72
    UniProtKB/TrEMBL
    A0A178UQU2
    Conserved Domains (3) summary
    PTZ00108
    Location:425 → 697
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    TIGR00927
    Location:2 → 270
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam08766
    Location:686 → 739
    DEK_C; DEK C terminal domain
Nucleotide Protein
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