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RNA-binding CRS1 / YhbY (CRM) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835580, updated on 18-Sep-2024

Summary

Official Full Name
RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Primary source
TAIR:AT5G54890
Locus tag
AT5G54890
See related
Araport:AT5G54890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MBG8.16; MBG8_16; mCSF2; mitochondrial CAF-like splicing factor 2
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Genomic context

Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (22293325..22295144)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene inositol-1,4,5-trisphosphate 5-phosphatase Neighboring gene DTW domain-containing protein Neighboring gene RNA-binding protein 45A Neighboring gene DEA(D/H)-box RNA helicase family protein

General gene information

Markers

NM_124871.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in Group II intron splicing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
RNA-binding CRS1 / YhbY (CRM) domain-containing protein
NP_200300.1
  • RNA-binding CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT4G31010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22293325..22295144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124871.3NP_200300.1  RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200300.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFU1
    UniProtKB/TrEMBL
    A0A178UQZ4, A0A5S9YE50
    Conserved Domains (1) summary
    smart01103
    Location:143228
    CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly