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CTD small phosphatase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835569, updated on 18-Sep-2024

Summary

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Official Full Name
CTD small phosphatase-like protein
Primary source
TAIR:AT5G54790
Locus tag
AT5G54790
See related
Araport:AT5G54790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MBG8.5; MBG8_5; VASCULAR-RELATED UNKNOWN PROTEIN 4; VUP4
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (22253986..22255663, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene glucose 6-phosphate/phosphate translocator 1 Neighboring gene tryptophan synthase beta-subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling. Grienenberger E, et al. Plant Physiol, 2014 Apr. PMID 24567189, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001345100.1
NM_124860.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in multidimensional cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in xylem development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CTD small phosphatase-like protein
NP_200290.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22253986..22255663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124860.2 → NP_200290.2  CTD small phosphatase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200290.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5BPG5, Q9FFU9
    UniProtKB/TrEMBL
    A0A654GB93

  2. NM_001345100.1 → NP_001330209.1  CTD small phosphatase-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UA57, A0A1P8BA29
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BPG5.1

Gene LinkOut

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