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DEG16 Trypsin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835564, updated on 18-Sep-2024

Summary

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Official Symbol
DEG16
Official Full Name
Trypsin family protein
Primary source
TAIR:AT5G54745
Locus tag
AT5G54745
See related
Araport:AT5G54745
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
degradation of periplasmic proteins 16
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Genomic context

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See DEG16 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (22240256..22241233, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene autophagy 18 F-like protein Neighboring gene seed storage albumin 5 Neighboring gene Transport protein particle (TRAPP) component Neighboring gene Translation initiation factor SUI1 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual specificities of the glyoxysomal/peroxisomal processing protease Deg15 in higher plants. Helm M, et al. Proc Natl Acad Sci U S A, 2007 Jul 3. PMID 17592111, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Trypsin family protein
NP_680437.1
  • Trypsin family protein; FUNCTIONS IN: catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 6 (TAIR:AT1G51150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22240256..22241233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_148132.1 → NP_680437.1  Trypsin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_680437.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E8B4
    UniProtKB/TrEMBL
    A0A5S9YE64, A0A654GB06
    Conserved Domains (1) summary
    pfam13365
    Location:72 → 188
    Trypsin_2; Trypsin-like peptidase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3E8B4.1

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