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PBP1 pinoid-binding protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835537, updated on 18-Sep-2024

Summary

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Official Symbol
PBP1
Official Full Name
pinoid-binding protein 1
Primary source
TAIR:AT5G54490
Locus tag
AT5G54490
See related
Araport:AT5G54490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24B18.11; F24B18_11; pinoid-binding protein 1
Summary
Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.
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Genomic context

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See PBP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (22121102..22122122)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene B-box type zinc finger family protein Neighboring gene hypothetical protein (DUF630 and DUF632) Neighboring gene ncRNA Neighboring gene flavodoxin-like quinone reductase 1 Neighboring gene Auxin-responsive GH3 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PINOID-mediated signaling involves calcium-binding proteins. Benjamins R, et al. Plant Physiol, 2003 Jul. PMID 12857841, Free PMC Article
  2. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124829.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pinoid-binding protein 1
NP_200260.1
  • pinoid-binding protein 1 (PBP1); CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22121102..22122122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124829.2 → NP_200260.1  pinoid-binding protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200260.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LG35, Q9LSQ6
    UniProtKB/TrEMBL
    A0A178URF6, A0A5S9YEI4
    Conserved Domains (1) summary
    pfam13833
    Location:50 → 104
    EF-hand_8; EF-hand domain pair
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSQ6.1

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