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BBX29 B-box type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835535, updated on 18-Sep-2024

Summary

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Official Symbol
BBX29
Official Full Name
B-box type zinc finger family protein
Primary source
TAIR:AT5G54470
Locus tag
AT5G54470
See related
Araport:AT5G54470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
B-box domain protein 29; F24B18.9; F24B18_9
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Genomic context

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See BBX29 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (22114304..22115539, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF295) Neighboring gene wound-responsive protein-like protein Neighboring gene hypothetical protein (DUF630 and DUF632) Neighboring gene ncRNA Neighboring gene pinoid-binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response: A case study of Arabidopsis BBX29. Wang S, et al. Plant Commun, 2023 Nov 13. PMID 37674317, Free PMC Article
  2. AtBBX29 integrates photomorphogenesis and defense responses in Arabidopsis. Medina-Fraga AL, et al. Photochem Photobiol Sci, 2023 Jun. PMID 36807054, Free PMC Article
  3. Two B-box domain proteins, BBX28 and BBX29, regulate flowering time at low ambient temperature in Arabidopsis. Wang MJ, et al. Plant Mol Biol, 2021 May. PMID 33554307
  4. BBX28/BBX29, HY5 and BBX30/31 form a feedback loop to fine-tune photomorphogenic development. Song Z, et al. Plant J, 2020 Oct. PMID 32654323
  5. A role for circadian evening elements in cold-regulated gene expression in Arabidopsis. Mikkelsen MD, et al. Plant J, 2009 Oct. PMID 19566593

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response: A case study of Arabidopsis BBX29.
    Title: Orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response: A case study of Arabidopsis BBX29.
  2. BBX28/BBX29, HY5 and BBX30/31 form a feedback loop to fine-tune photomorphogenic development.
    Title: BBX28/BBX29, HY5 and BBX30/31 form a feedback loop to fine-tune photomorphogenic development.
  3. Two B-box domain proteins, BBX28 and BBX29, regulate flowering time at low ambient temperature in Arabidopsis.
    Title: Two B-box domain proteins, BBX28 and BBX29, regulate flowering time at low ambient temperature in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124827.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
B-box type zinc finger family protein
NP_200258.2
  • B-box type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: response to cold, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G27310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22114304..22115539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124827.5 → NP_200258.2  B-box type zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200258.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJV0, A0A654GBF1, Q6NLH4
    Conserved Domains (1) summary
    cd19821
    Location:5 → 47
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
Nucleotide Protein
Heading Accession and Version

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