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DNA mismatch repair protein MutS, type 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835495, updated on 18-Sep-2024

Summary

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Official Full Name
DNA mismatch repair protein MutS, type 2
Primary source
TAIR:AT5G54090
Locus tag
AT5G54090
See related
Araport:AT5G54090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MJP23.7; MJP23_7
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Genomic context

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Location:
chromosome: 5
Exon count:
18
Sequence:
Chromosome: 5; NC_003076.8 (21948124..21952594, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene B3 domain protein Neighboring gene heat shock transcription factor A9 Neighboring gene ncRNA Neighboring gene homogentisate 1,2-dioxygenase Neighboring gene proteoglycan-like protein Neighboring gene SPFH/Band 7/PHB domain-containing membrane-associated protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_124788.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of DNA recombination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA mismatch repair protein MutS, type 2
NP_200220.2
  • DNA mismatch repair protein MutS, type 2; FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, maintenance of fidelity involved in DNA-dependent DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, type 2 (InterPro:IPR005747), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein MutS, type 2 (TAIR:AT1G65070.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21948124..21952594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124788.5 → NP_200220.2  DNA mismatch repair protein MutS, type 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200220.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GAQ8, F4JYU0
    Conserved Domains (3) summary
    cd03280
    Location:384 → 607
    ABC_MutS2; ATP-binding cassette domain of MutS2
    PRK00409
    Location:48 → 794
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cl19107
    Location:193 → 229
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
Nucleotide Protein
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