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LOW protein: zinc finger CCCH domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835425, updated on 18-Sep-2024

Summary

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Official Full Name
LOW protein: zinc finger CCCH domain protein
Primary source
TAIR:AT5G53440
Locus tag
AT5G53440
See related
Araport:AT5G53440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MYN8.5; MYN8_5
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (21683144..21688273, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene CCT motif family protein Neighboring gene SET domain group 29 Neighboring gene OBP3-responsive protein 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001345056.1
NM_124723.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LOW protein: zinc finger CCCH domain protein
NP_200156.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21683144..21688273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124723.2 → NP_200156.1  LOW protein: zinc finger CCCH domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200156.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GAT3, Q9LV05
    Conserved Domains (1) summary
    TIGR00927
    Location:43 → 314
    2A1904; K+-dependent Na+/Ca+ exchanger

  2. NM_001345056.1 → NP_001331244.1  LOW protein: zinc finger CCCH domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD90, A0A654GAT3
Nucleotide Protein
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