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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835403, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT5G53220
Locus tag
AT5G53220
See related
Araport:AT5G53220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K19E1.2; K19E1_2
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (21595990..21598316)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene hypothetical protein (DUF295) Neighboring gene hypothetical protein (DUF295)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036989.2
NM_001125952.2
NM_001345045.1
NM_001345046.1
NM_001345047.1
NM_001345048.1
NM_124701.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_001032066.1
  • unknown protein; Has 3081 Blast hits to 2526 proteins in 331 species: Archae - 2; Bacteria - 227; Metazoa - 1059; Fungi - 555; Plants - 177; Viruses - 49; Other Eukaryotes - 1012 (source: NCBI BLink).
NP_001119424.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_200134.2
  • unknown protein; Has 3099 Blast hits to 2528 proteins in 332 species: Archae - 2; Bacteria - 245; Metazoa - 1059; Fungi - 555; Plants - 177; Viruses - 49; Other Eukaryotes - 1012 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21595990..21598316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036989.2 → NP_001032066.1  uncharacterized protein AT5G53220 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032066.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS2, A0A384LCQ6, Q5BPG9, Q5XUZ8

  2. NM_001345045.1 → NP_001331625.1  uncharacterized protein AT5G53220 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS2, A0A384LCQ6, Q5BPG9, Q5XUZ8

  3. NM_001345047.1 → NP_001331627.1  uncharacterized protein AT5G53220 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS2, A0A384LCQ6, Q5BPG9, Q5XUZ8

  4. NM_001125952.2 → NP_001119424.1  uncharacterized protein AT5G53220 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119424.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS2, A0A384LCQ6, Q5BPG9, Q5XUZ8

  5. NM_124701.3 → NP_200134.2  uncharacterized protein AT5G53220 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200134.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS2, A0A384LCQ6, Q5BPG9, Q5XUZ8

  6. NM_001345046.1 → NP_001331626.1  uncharacterized protein AT5G53220 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS2, A0A384LCQ6, Q5BPG9, Q5XUZ8

  7. NM_001345048.1 → NP_001331628.1  uncharacterized protein AT5G53220 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS2, A0A384LCQ6, Q5BPG9, Q5XUZ8
Nucleotide Protein
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