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ER-based factor for assembly of V-ATPase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835377, updated on 18-Sep-2024

Summary

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Official Full Name
ER-based factor for assembly of V-ATPase
Primary source
TAIR:AT5G52980
Locus tag
AT5G52980
See related
Araport:AT5G52980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNB8.4; MNB8_4
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (21482140..21483797, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene thylakoid lumen 15.0 kDa protein Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene SNARE-like superfamily protein Neighboring gene 2A phosphatase associated protein of 46 kD Neighboring gene calcium-transporting ATPase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001345018.1
NM_124677.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ER-based factor for assembly of V-ATPase
NP_200110.1
  • CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21482140..21483797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124677.5 → NP_200110.1  ER-based factor for assembly of V-ATPase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200110.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GAG5, A0A7G2FFV4, Q9LVV4
    Conserved Domains (1) summary
    pfam11712
    Location:73 → 193
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase

  2. NM_001345018.1 → NP_001331198.1  ER-based factor for assembly of V-ATPase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD54
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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