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CBS domain protein with a domain protein (DUF21) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835356, updated on 18-Sep-2024

Summary

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Official Full Name
CBS domain protein with a domain protein (DUF21)
Primary source
TAIR:AT5G52790
Locus tag
AT5G52790
See related
Araport:AT5G52790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6N7.28; F6N7_28
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (21391566..21395016, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Copper transport protein family Neighboring gene transmembrane protein, putative (DUF3464) Neighboring gene DNA primase Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in magnesium ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CBS domain protein with a domain protein (DUF21)
NP_200091.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21391566..21395016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345010.1 → NP_001332388.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UML1, A0A1P8BGS5
    Conserved Domains (1) summary
    COG1253
    Location:11 → 383
    TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

  2. NM_001345009.1 → NP_001332389.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UML1, A0A1P8BGS5
    Conserved Domains (1) summary
    COG1253
    Location:11 → 383
    TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

  3. NM_124657.3 → NP_200091.2  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200091.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KHM3, Q9LTD8
    UniProtKB/TrEMBL
    A0A178ULR3, A0A5S9YDE8, A0A654GAL7
    Conserved Domains (1) summary
    COG1253
    Location:11 → 392
    TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

  4. NM_001345011.1 → NP_001332390.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKN1, A0A1P8BGT2

  5. NM_001345012.1 → NP_001332387.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UML1, A0A1P8BGT4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LTD8.2

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