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SHOC1 shortage in chiasmata 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835305, updated on 18-Sep-2024

Summary

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Official Symbol
SHOC1
Official Full Name
shortage in chiasmata 1
Primary source
TAIR:AT5G52290
Locus tag
AT5G52290
See related
Araport:AT5G52290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K24M7.2; K24M7_2; SHORTAGE IN CHIASMATA 1
Summary
Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility.
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Genomic context

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See SHOC1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (21230224..21236554, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SNARE-like superfamily protein Neighboring gene miscRNA Neighboring gene Myosin heavy chain-related protein Neighboring gene CAP160 protein Neighboring gene low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SHOC1, an XPF endonuclease-related protein, is essential for the formation of class I meiotic crossovers. Macaisne N, et al. Curr Biol, 2008 Sep 23. PMID 18812090
  2. SHOC1 and PTD form an XPF-ERCC1-like complex that is required for formation of class I crossovers. Macaisne N, et al. J Cell Sci, 2011 Aug 15. PMID 21771883
  3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124608.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within resolution of meiotic recombination intermediates IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
shortage in chiasmata 1
NP_200042.4
  • SHORTAGE IN CHIASMATA 1 (SHOC1); Has 68 Blast hits to 59 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 8; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21230224..21236554 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124608.5 → NP_200042.4  shortage in chiasmata 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200042.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B6D435, F4KG50, Q9FHD0
    UniProtKB/TrEMBL
    A0A178UN30
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KG50.1

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