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MATE efflux family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835280, updated on 18-Sep-2024

Summary

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Official Full Name
MATE efflux family protein
Primary source
TAIR:AT5G52050
Locus tag
AT5G52050
See related
Araport:AT5G52050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtDTX50; Detoxification Efflux Carrier 50; DTX50; MSG15.13; MSG15_13
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (21138703..21140876)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TraB family protein Neighboring gene uncharacterized protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene miscRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DTX/MATE-type transporter facilitates abscisic acid efflux and modulates ABA sensitivity and drought tolerance in Arabidopsis. Zhang H, et al. Mol Plant, 2014 Oct. PMID 24851876
  2. A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis. Wang R, et al. J Exp Bot, 2015 Oct. PMID 26160579
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtDTX50, functions as an abscissic acid efflux transporter. [AtDTX50]
    Title: A DTX/MATE-type transporter facilitates abscisic acid efflux and modulates ABA sensitivity and drought tolerance in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124584.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables abscisic acid transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in abscisic acid transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in root morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in late endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
MATE efflux family protein
NP_200018.1
  • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G23030.1); Has 10796 Blast hits to 10712 proteins in 2003 species: Archae - 245; Bacteria - 7617; Metazoa - 145; Fungi - 324; Plants - 1294; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21138703..21140876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124584.3 → NP_200018.1  MATE efflux family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200018.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7FLS2, Q9FJ87
    UniProtKB/TrEMBL
    A0A178UM67, A0A5S9YDD0, A0A654GAD7
    Conserved Domains (1) summary
    cd13132
    Location:35 → 477
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FJ87.1

Gene LinkOut

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