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TraB family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835278, updated on 18-Sep-2024

Summary

Official Full Name
TraB family protein
Primary source
TAIR:AT5G52030
Locus tag
AT5G52030
See related
Araport:AT5G52030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MSG15.11; MSG15_11
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Genomic context

Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (21128085..21130244)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene MATE efflux family protein

General gene information

NM_001344973.1
NM_203197.1

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  
located_in plasma membrane  

General protein information

Preferred Names
TraB family protein
NP_001318785.1
  • TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974926.1
  • TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21128085..21130244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344973.1NP_001318785.1  TraB family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KER9
    Conserved Domains (1) summary
    cl12050
    Location:50243
    TraB; TraB family
  2. NM_203197.1NP_974926.1  TraB family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974926.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGS4, Q9FJ89
    Conserved Domains (1) summary
    cl12050
    Location:89387
    TraB; TraB family
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