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complex 1 protein, LYR family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835271, updated on 18-Sep-2024

Summary

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Official Full Name
complex 1 protein, LYR family protein
Primary source
TAIR:AT5G51960
Locus tag
AT5G51960
See related
Araport:AT5G51960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MSG15.4; MSG15_4
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (21110333..21111424)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein Neighboring gene RNA polymerase Rpb6 Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene C-repeat-binding factor 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001344971.1
NM_124575.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
complex 1 protein, LYR family protein
NP_200009.1
  • CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21110333..21111424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124575.7 → NP_200009.1  complex 1 protein, LYR family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200009.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULU0, A0A5S9YD65, A0A7G2FJG6, Q9FJ96
    Conserved Domains (2) summary
    cl40429
    Location:12 → 45
    Complex1_LYR_SF; LYR (leucine-tyrosine-arginine) motif found in Complex1_LYR-like superfamily
    pfam13233
    Location:10 → 96
    Complex1_LYR_2; Complex1_LYR-like

  2. NM_001344971.1 → NP_001331290.1  complex 1 protein, LYR family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULU0, A0A5S9YD65, A0A7G2FJG6, Q9FJ96
    Conserved Domains (2) summary
    cl40429
    Location:12 → 45
    Complex1_LYR_SF; LYR (leucine-tyrosine-arginine) motif found in Complex1_LYR-like superfamily
    pfam13233
    Location:10 → 96
    Complex1_LYR_2; Complex1_LYR-like
Nucleotide Protein
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