U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ubiquitin carboxyl-terminal hydrolase-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835227, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Ubiquitin carboxyl-terminal hydrolase-related protein
Primary source
TAIR:AT5G51530
Locus tag
AT5G51530
See related
Araport:AT5G51530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K17N15.8; K17N15_8
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (20927069..20931886, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene jagunal-like protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene Zincin-like metalloproteases family protein Neighboring gene low psii accumulation2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Ubiquitin carboxyl-terminal hydrolase-related protein
NP_199966.1
  • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61950.1); Has 222 Blast hits to 192 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 213; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20927069..20931886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344941.1 → NP_001330360.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAL0, A0A5S9YDR6, A0A654GAH7, A0A7G2FLU1

  2. NM_124532.2 → NP_199966.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199966.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMR2, Q9FHN1
    Conserved Domains (3) summary
    pfam00443
    Location:850 → 1142
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam04780
    Location:189 → 648
    DUF629; Protein of unknown function (DUF629)
    pfam04781
    Location:18 → 125
    DUF627; Protein of unknown function (DUF627)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.