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Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835188, updated on 18-Sep-2024

Summary

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Official Full Name
Pseudouridine synthase family protein
Primary source
TAIR:AT5G51140
Locus tag
AT5G51140
See related
Araport:AT5G51140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MWD22.8; MWD22_8
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (20783931..20786843, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transcriptional coactivator/pterin dehydratase Neighboring gene ECA1 gametogenesis family protein (DUF1278) Neighboring gene polyadenylate-binding protein 1 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Neighboring gene Ankyrin repeat family protein Neighboring gene U6 snRNA phosphodiesterase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. Yu F, et al. Plant Cell, 2008 Jul. PMID 18599582, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001203584.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables pseudouridine synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pseudouridine synthase family protein
NP_001190513.1
  • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluC/RluD (InterPro:IPR006225), Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G52260.2).
NP_199927.1
  • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RluC/RluD (InterPro:IPR006225), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G52260.2); Has 18563 Blast hits to 18531 proteins in 2681 species: Archae - 12; Bacteria - 14066; Metazoa - 277; Fungi - 208; Plants - 208; Viruses - 0; Other Eukaryotes - 3792 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20783931..20786843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124493.4 → NP_199927.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199927.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LG24, Q8W4Q8, Q9LU60
    UniProtKB/TrEMBL
    A0A178UGD1, A0A5S9YD82, A0A654GAD9
    Conserved Domains (1) summary
    cd02557
    Location:121 → 394
    PseudoU_synth_ScRIB2; Pseudouridine synthases similar to Saccharomyces cerevisiae RIB2

  2. NM_001203584.1 → NP_001190513.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190513.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GAD9, F4KBV6
    Conserved Domains (1) summary
    cd02557
    Location:121 → 386
    PseudoU_synth_ScRIB2; Pseudouridine synthases similar to Saccharomyces cerevisiae RIB2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LU60.1

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