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Mannose-binding lectin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835048, updated on 18-Sep-2024

Summary

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Official Full Name
Mannose-binding lectin superfamily protein
Primary source
TAIR:AT5G49850
Locus tag
AT5G49850
See related
Araport:AT5G49850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K21G20.6; K21G20_6
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (20259440..20262585, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene methionine S-methyltransferase Neighboring gene root UVB sensitive protein (Protein of unknown function, DUF647) Neighboring gene exocyst complex component 84B Neighboring gene ATP-dependent Clp protease Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Mannose-binding lectin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_124363.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Mannose-binding lectin superfamily protein
NP_199796.1
  • Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G49870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20259440..20262585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124363.3 → NP_199796.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199796.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LTA8
    UniProtKB/TrEMBL
    A0A654G9I0
    Conserved Domains (2) summary
    smart00915
    Location:157 → 291
    Jacalin; Jacalin-like lectin domain
    pfam01419
    Location:457 → 592
    Jacalin; Jacalin-like lectin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LTA8.1

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