RUS6 root UVB sensitive protein (Protein of unknown function, DUF647) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: RUS6
Official Full Name: root UVB sensitive protein (Protein of unknown function, DUF647)
Primary source: TAIR:AT5G49820
Locus tag: AT5G49820
See related: Araport:AT5G49820
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: EMBRYO DEFECTIVE 1879; K21G20.3; K21G20_3; ROOT UV-B SENSITIVE 6
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Genomic context

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See RUS6 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 13

Sequence:: Chromosome: 5; NC_003076.8 (20246391..20249622, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

RUS6, a DUF647-containing protein, is essential for early embryonic development in Arabidopsis thaliana.
Title: RUS6, a DUF647-containing protein, is essential for early embryonic development in Arabidopsis thaliana.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_124360.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy	NAS Non-traceable Author Statement more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: root UVB sensitive protein (Protein of unknown function, DUF647)

NP_568713.1

CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT2G31190.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

20246391..20249622 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_124360.4 → NP_568713.1 root UVB sensitive protein (Protein of unknown function, DUF647) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568713.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q93YU2, Q9LTB1

UniProtKB/TrEMBL

A0A178U6M3, A0A5S9YCQ4

Conserved Domains (1) summary

pfam04884
Location:104 → 333

DUF647; Vitamin B6 photo-protection and homoeostasis