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XIP1 Leucine-rich repeat transmembrane protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835028, updated on 18-Sep-2024

Summary

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Official Symbol
XIP1
Official Full Name
Leucine-rich repeat transmembrane protein kinase family protein
Primary source
TAIR:AT5G49660
Locus tag
AT5G49660
See related
Araport:AT5G49660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
C-terminally encoded peptide receptor 1; CEPR1; MNI5.4; MNI5_4; XYLEM INTERMIXED WITH PHLOEM 1
Summary
The gene encodes receptorlike kinase (RLK). Involved in the maintenance organization of cell files or cell morphology in conductive elements. Functions as a receptor for CEP1 peptide. Mediates nitrate uptake signaling.
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Genomic context

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See XIP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (20161140..20164729, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene xylulose kinase-2 Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ncRNA Neighboring gene SABRE-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Peptide Hormone Receptor CEPR1 Functions in the Reproductive Tissue to Control Seed Size and Yield. Taleski M, et al. Plant Physiol, 2020 Jun. PMID 32317363, Free PMC Article
  2. XYLEM INTERMIXED WITH PHLOEM1, a leucine-rich repeat receptor-like kinase required for stem growth and vascular development in Arabidopsis thaliana. Bryan AC, et al. Planta, 2012 Jan. PMID 21853254
  3. CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis. Roberts I, et al. J Exp Bot, 2016 Aug. PMID 27296247, Free PMC Article
  4. CEP-CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth. Chapman K, et al. J Exp Bot, 2019 Aug 7. PMID 31056646, Free PMC Article
  5. Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling. Tabata R, et al. Science, 2014 Oct 17. PMID 25324386

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Peptide Hormone Receptor CEPR1 Functions in the Reproductive Tissue to Control Seed Size and Yield.
    Title: The Peptide Hormone Receptor CEPR1 Functions in the Reproductive Tissue to Control Seed Size and Yield.
  2. C-TERMINALLY ENCODED PEPTIDE 5 (CEP5) is a novel, auxin-repressed and phloem pole-expressed signal assisting in the formation of lateral roots. In addition, there is evidence for the involvement of its proposed receptor, XYLEM INTERMIXED WITH PHLOEM 1 (XIP1)/CEP RECEPTOR 1 (CEPR1), during the process of lateral root initiation.
    Title: CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis.
  3. this study concluded that two LRR-RKs At5g49660 and At1g72180 function as CEP receptors and named them CEPR1 and CEPR2.
    Title: Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124344.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables peptide binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables peptide hormone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables peptide hormone receptor binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables peptide receptor activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transmembrane receptor protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within floral organ development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in lateral root formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nitrate import IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in nitrate import IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of lateral root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of anthocyanin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of lateral root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of lignin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of root development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of secondary cell wall biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of seed growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of shoot system development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to nitrate starvation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within xylem and phloem pattern formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat transmembrane protein kinase family protein
NP_199777.1
  • Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G09970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20161140..20164729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124344.3 → NP_199777.1  Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199777.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GY29, Q9FGL5
    UniProtKB/TrEMBL
    A0A178U894, A0A5S9YCJ2, A0A654G9R7
    Conserved Domains (2) summary
    PLN00113
    Location:47 → 933
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:245 → 269
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FGL5.1

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