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LOW PSII ACCUMULATION protein (DUF1995) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834937, updated on 18-Sep-2024

Summary

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Official Full Name
LOW PSII ACCUMULATION protein (DUF1995)
Primary source
TAIR:AT5G48790
Locus tag
AT5G48790
See related
Araport:AT5G48790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K24G6.12; K24G6_12
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (19779860..19782066, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene disease resistance protein (TIR-NBS class) Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cytochrome B5 isoform D

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001344806.1
NM_001344807.1
NM_124256.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
LOW PSII ACCUMULATION protein (DUF1995)
NP_568702.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Low PSII Accumulation 3 (TAIR:AT1G73060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19779860..19782066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124256.4 → NP_568702.1  LOW PSII ACCUMULATION protein (DUF1995) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568702.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIU7, A0A654G9K1, Q94F50
    Conserved Domains (1) summary
    pfam09353
    Location:73 → 305
    DUF1995; Domain of unknown function (DUF1995)

  2. NM_001344806.1 → NP_001332148.1  LOW PSII ACCUMULATION protein (DUF1995) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9FKB7

  3. NM_001344807.1 → NP_001332149.1  LOW PSII ACCUMULATION protein (DUF1995) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9FKB7
Nucleotide Protein
Heading Accession and Version

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