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Aldolase-type TIM barrel family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834875, updated on 18-Sep-2024

Summary

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Official Full Name
Aldolase-type TIM barrel family protein
Primary source
TAIR:AT5G48220
Locus tag
AT5G48220
See related
Araport:AT5G48220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MIF21.11; MIF21_11
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (19549676..19552267)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene zinc ion binding protein Neighboring gene prolamin-like protein (DUF1278) Neighboring gene acetoacetyl-CoA thiolase 2 Neighboring gene Rrp15p protein Neighboring gene B-box type zinc finger protein with CCT domain-containing protein Neighboring gene DUF868 family protein (DUF868)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
  2. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
  3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085265.2
NM_001203559.1
NM_001344764.1
NM_124197.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables indole-3-glycerol-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tryptophan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Aldolase-type TIM barrel family protein
NP_001190488.1
  • Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1).
NP_001318761.1
  • Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1); Has 8154 Blast hits to 8154 proteins in 2220 species: Archae - 205; Bacteria - 5386; Metazoa - 3; Fungi - 158; Plants - 84; Viruses - 0; Other Eukaryotes - 2318 (source: NCBI BLink).
NP_199633.1
  • Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19549676..19552267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203559.1 → NP_001190488.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190488.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FF92, F4K083
    Conserved Domains (1) summary
    PLN02460
    Location:27 → 362
    PLN02460; indole-3-glycerol-phosphate synthase

  2. NM_001344764.1 → NP_001318761.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FF92, A8MS79
    Conserved Domains (1) summary
    PLN02460
    Location:1 → 314
    PLN02460; indole-3-glycerol-phosphate synthase

  3. NM_124197.3 → NP_199633.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199633.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9E1, A0A7G2FF92, Q9LUB2
    Conserved Domains (1) summary
    PLN02460
    Location:40 → 377
    PLN02460; indole-3-glycerol-phosphate synthase

  4. NM_001085265.2 → NP_001078734.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078734.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FF92, A8MS79
    Conserved Domains (1) summary
    PLN02460
    Location:1 → 314
    PLN02460; indole-3-glycerol-phosphate synthase
Nucleotide Protein
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