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ELP1 EDM2-like protein1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834861, updated on 18-Sep-2024

Summary

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Official Symbol
ELP1
Official Full Name
EDM2-like protein1
Primary source
TAIR:AT5G48090
Locus tag
AT5G48090
See related
Araport:AT5G48090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EDM2-like protein1; MDN11.17; MDN11_17
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Genomic context

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See ELP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Sequence:
Chromosome: 5; NC_003076.8 (19484015..19488657)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 20 Neighboring gene Laccase/Diphenol oxidase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001161296.1
NM_001344757.1
NM_124183.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
EDM2-like protein1
NP_001318757.1
  • EDM2-like protein1 (ELP1); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: ENHANCED DOWNY MILDEW 2 (TAIR:AT5G55390.2); Has 359 Blast hits to 339 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
NP_199620.4
  • EDM2-like protein1 (ELP1); BEST Arabidopsis thaliana protein match is: ENHANCED DOWNY MILDEW 2 (TAIR:AT5G55390.2); Has 373 Blast hits to 351 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19484015..19488657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344757.1 → NP_001318757.1  EDM2-like protein1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G907, Q9FI29
    Conserved Domains (3) summary
    cd15565
    Location:93 → 158
    PHD2_NSD; PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    cl17173
    Location:428 → 458
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    cl22851
    Location:33 → 87
    PHD_SF; PHD finger superfamily

  2. NM_001161296.1 → NP_001154768.1  EDM2-like protein1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154768.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G907, Q9FI29
    Conserved Domains (3) summary
    cd15565
    Location:93 → 158
    PHD2_NSD; PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    cl17173
    Location:428 → 458
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    cl22851
    Location:33 → 87
    PHD_SF; PHD finger superfamily

  3. NM_124183.4 → NP_199620.4  EDM2-like protein1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199620.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G907, F4K064
    Conserved Domains (3) summary
    cd15565
    Location:134 → 199
    PHD2_NSD; PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    cl17173
    Location:469 → 499
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    cl22851
    Location:74 → 128
    PHD_SF; PHD finger superfamily
Nucleotide Protein
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