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RABA4C RAB GTPase homolog A4C [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834847, updated on 18-Sep-2024

Summary

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Official Symbol
RABA4C
Official Full Name
RAB GTPase homolog A4C
Primary source
TAIR:AT5G47960
Locus tag
AT5G47960
See related
Araport:AT5G47960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRABA4C; K16F13.4; K16F13_4; RAB GTPase homolog A4C; SMALL MOLECULAR WEIGHT G-PROTEIN 1; SMG1
Summary
Encodes a small molecular weight g-protein.
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Genomic context

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See RABA4C in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (19421340..19422533, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S27 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interaction of the Arabidopsis GTPase RabA4c with its effector PMR4 results in complete penetration resistance to powdery mildew. Ellinger D, et al. Plant Cell, 2014 Jul. PMID 25056861, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RabA4c directly interacts with PMR4, which can be seen as an effector of this GTPase.
    Title: Interaction of the Arabidopsis GTPase RabA4c with its effector PMR4 results in complete penetration resistance to powdery mildew.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124170.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plastid HDA PubMed 

General protein information

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Preferred Names
RAB GTPase homolog A4C
NP_199607.1
  • RAB GTPase homolog A4C (RABA4C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4D (TAIR:AT3G12160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19421340..19422533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124170.3 → NP_199607.1  RAB GTPase homolog A4C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199607.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FE79
    UniProtKB/TrEMBL
    A0A178UQI5, A0A5S9YEB1
    Conserved Domains (1) summary
    cd01868
    Location:13 → 177
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FE79.1

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