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binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834820, updated on 18-Sep-2024

Summary

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Official Full Name
binding protein
Primary source
TAIR:AT5G47690
Locus tag
AT5G47690
See related
Araport:AT5G47690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
33
Sequence:
Chromosome: 5; NC_003076.8 (19317668..19327431)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nudix hydrolase homolog 2 Neighboring gene Homeodomain-like superfamily protein Neighboring gene nuclear factor Y, subunit B6 Neighboring gene tRNA (guanine(9)-N1)-methyltransferase-like protein Neighboring gene 60S acidic ribosomal protein family Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of the Cohesin Cofactor PDS5 (SPO76) During Meiosis and DNA Repair in Arabidopsis thaliana. Pradillo M, et al. Front Plant Sci, 2015. PMID 26648949, Free PMC Article
  2. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
  4. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001125917.1
NM_001125918.2
NM_124143.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA recombination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within DNA repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in DNA repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in homologous recombination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within microsporogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
binding protein
NP_001119389.1
  • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001119390.1
  • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_199580.3
  • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 16808 Blast hits to 11211 proteins in 698 species: Archae - 33; Bacteria - 718; Metazoa - 7012; Fungi - 1729; Plants - 1224; Viruses - 236; Other Eukaryotes - 5856 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19317668..19327431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344741.1 → NP_001331466.1  binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U843, A0A1P8BDX9
    Conserved Domains (4) summary
    PTZ00108
    Location:1189 → 1454
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    TIGR00927
    Location:1378 → 1495
    2A1904; K+-dependent Na+/Ca+ exchanger
    cd20404
    Location:1272 → 1322
    Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    cd19953
    Location:2 → 546
    PDS5; Sister chromatid cohesion protein PDS5

  2. NM_001125918.2 → NP_001119390.1  binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119390.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U843, A0A178U9B2
    Conserved Domains (4) summary
    PTZ00108
    Location:1286 → 1551
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    TIGR00927
    Location:1475 → 1592
    2A1904; K+-dependent Na+/Ca+ exchanger
    cd20404
    Location:1369 → 1419
    Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    cd19953
    Location:26 → 643
    PDS5; Sister chromatid cohesion protein PDS5

  3. NM_001125917.1 → NP_001119389.1  binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119389.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U7G8, A0A178U843, F4JYL8
    Conserved Domains (1) summary
    cl00909
    Location:1509 → 1589
    Ribosomal_L24e_L24; Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor ...

  4. NM_124143.4 → NP_199580.3  binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199580.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H5K3, B6EUB3, Q0WNL7, Q9FIL0
    UniProtKB/TrEMBL
    A0A178U843
    Conserved Domains (4) summary
    PTZ00108
    Location:1286 → 1533
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    TIGR00927
    Location:1474 → 1590
    2A1904; K+-dependent Na+/Ca+ exchanger
    cd20404
    Location:1368 → 1418
    Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    cd19953
    Location:26 → 643
    PDS5; Sister chromatid cohesion protein PDS5
Nucleotide Protein
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