U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NF-YB6 nuclear factor Y, subunit B6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834818, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
NF-YB6
Official Full Name
nuclear factor Y, subunit B6
Primary source
TAIR:AT5G47670
Locus tag
AT5G47670
See related
Araport:AT5G47670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''nuclear factor Y; L1L; LEC1-LIKE; MNJ7.26; MNJ7_26; nuclear factor Y; subunit B6; subunit B6''
Summary
Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1). Functions as a regulator of embryo development.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NF-YB6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (19314778..19316169)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nuclear factor Y, subunit B2 Neighboring gene nudix hydrolase homolog 2 Neighboring gene Homeodomain-like superfamily protein Neighboring gene tRNA (guanine(9)-N1)-methyltransferase-like protein Neighboring gene binding protein Neighboring gene 60S acidic ribosomal protein family

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis. Warpeha KM, et al. Plant Physiol, 2007 Apr. PMID 17322342, Free PMC Article
  2. Arabidopsis DPB3-1, a DREB2A interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with NF-Y subunits. Sato H, et al. Plant Cell, 2014 Dec. PMID 25490919, Free PMC Article
  3. Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. Yamamoto A, et al. Plant J, 2009 Jun. PMID 19207209
  4. Interactions and CCAAT-binding of Arabidopsis thaliana NF-Y subunits. Calvenzani V, et al. PLoS One, 2012. PMID 22912760, Free PMC Article
  5. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Hackenberg D, et al. Mol Plant, 2012 Jul. PMID 22199235

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001085258.1
NM_001344740.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
nuclear factor Y, subunit B6
NP_001078727.1
  • ''nuclear factor Y, subunit B6'' (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G21970.1); Has 1453 Blast hits to 1453 proteins in 242 species: Archae - 2; Bacteria - 0; Metazoa - 485; Fungi - 345; Plants - 522; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
NP_001318754.1
  • ''nuclear factor Y, subunit B6'' (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: nucleus, intracellular; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G21970.1); Has 1452 Blast hits to 1452 proteins in 242 species: Archae - 2; Bacteria - 0; Metazoa - 484; Fungi - 345; Plants - 522; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19314778..19316169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124141.4 → NP_199578.2  nuclear factor Y, subunit B6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199578.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84W66, Q8GV55, Q9FGJ0
    UniProtKB/TrEMBL
    A0A178UB79, A0A5S9YD16
    Conserved Domains (1) summary
    pfam00808
    Location:61 → 126
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

  2. NM_001344740.1 → NP_001318754.1  nuclear factor Y, subunit B6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84W66, Q8GV55, Q9FGJ0
    UniProtKB/TrEMBL
    A0A178UB79, A0A5S9YD16
    Conserved Domains (1) summary
    pfam00808
    Location:61 → 126
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

  3. NM_001085258.1 → NP_001078727.1  nuclear factor Y, subunit B6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078727.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84W66
    Conserved Domains (1) summary
    pfam00808
    Location:33 → 97
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84W66.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.