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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834795, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT5G47455
Locus tag
AT5G47455
See related
Araport:AT5G47455
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (19250659..19252491)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene tonoplast intrinsic protein 2;3 Neighboring gene miscRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Nodulin MtN21 /EamA-like transporter family protein Neighboring gene RGPR-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001161292.1
NM_001344721.1
NM_001344722.1
NM_001344724.1
NM_124118.3
NM_180815.3
NM_180816.2
NM_180817.3
NM_203168.3
NM_203169.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_001154764.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_568683.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 125 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851146.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851147.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851148.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 138 Blast hits to 138 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974897.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974898.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19250659..19252491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344723.1 → NP_001330801.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBY9, A0A5S9YBW5, A0A654G8W3

  2. NM_180816.2 → NP_851147.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851147.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JX59, Q8LC27

  3. NM_001344724.1 → NP_001330800.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBY9, A0A5S9YBW5, A0A654G8W3

  4. NM_203168.3 → NP_974897.2  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974897.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JX59, Q8LC27

  5. NM_001344721.1 → NP_001330803.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBY9, A0A5S9YBW5, A0A654G8W3

  6. NM_001161292.1 → NP_001154764.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154764.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFY5, Q84MD3

  7. NM_001344722.1 → NP_001330802.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFY5, Q84MD3

  8. NM_203169.2 → NP_974898.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974898.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFY5, Q84MD3

  9. NM_180817.3 → NP_851148.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851148.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFY5, Q8GYB2

  10. NM_180815.3 → NP_851146.1  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851146.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFY5, Q84MD3

  11. NM_124118.3 → NP_568683.2  uncharacterized protein AT5G47455 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568683.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JX57, Q8LC27
Nucleotide Protein
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