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Hyaluronan / mRNA binding family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834767, updated on 18-Sep-2024

Summary

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Official Full Name
Hyaluronan / mRNA binding family
Primary source
TAIR:AT5G47210
Locus tag
AT5G47210
See related
Araport:AT5G47210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQL5.6; MQL5_6
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (19168941..19171263, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Plant VAMP (vesicle-associated membrane protein) family protein Neighboring gene Ribosomal protein L19 family protein Neighboring gene RAB GTPase homolog 1A Neighboring gene ethylene responsive element binding factor 2 Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. Ibl V, et al. J Proteome Res, 2012 Jan 1. PMID 22010978, Free PMC Article
  2. The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition. Caillaud MC, et al. PLoS Pathog, 2014 Oct. PMID 25393742, Free PMC Article
  3. LIK1, a CERK1-interacting kinase, regulates plant immune responses in Arabidopsis. Le MH, et al. PLoS One, 2014. PMID 25036661, Free PMC Article
  4. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
  5. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001085254.1
NM_001085255.1
NM_124092.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in plasma membrane HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Hyaluronan / mRNA binding family
NP_001078723.1
  • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 14835 Blast hits to 8674 proteins in 878 species: Archae - 15; Bacteria - 4877; Metazoa - 4498; Fungi - 1235; Plants - 1700; Viruses - 202; Other Eukaryotes - 2308 (source: NCBI BLink).
NP_001078724.1
  • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 17408 Blast hits to 9992 proteins in 935 species: Archae - 13; Bacteria - 5069; Metazoa - 5239; Fungi - 1478; Plants - 1692; Viruses - 242; Other Eukaryotes - 3675 (source: NCBI BLink).
NP_199532.1
  • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19168941..19171263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124092.4 → NP_199532.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199532.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQD7, A8MRX4, Q8LDQ7, Q9LVT8
    UniProtKB/TrEMBL
    A0A178UQN5, A0A5S9YCF5
    Conserved Domains (2) summary
    pfam04774
    Location:147 → 257
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam09598
    Location:1 → 61
    Stm1_N

  2. NM_001085254.1 → NP_001078723.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078723.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVT8
    Conserved Domains (2) summary
    pfam04774
    Location:147 → 247
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam09598
    Location:5 → 62
    Stm1_N; Stm1

  3. NM_001085255.1 → NP_001078724.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078724.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVT8
    Conserved Domains (2) summary
    pfam04774
    Location:147 → 257
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam09598
    Location:5 → 62
    Stm1_N; Stm1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVT8.1

Gene LinkOut

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