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Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834711, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR-like) superfamily protein
Primary source
TAIR:AT5G46680
Locus tag
AT5G46680
See related
Araport:AT5G46680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MZA15.9; MZA15_9
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (18940903..18942672)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene beta HLH protein 71 Neighboring gene Tetraspanin family protein Neighboring gene PLATZ transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124038.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR-like) superfamily protein
NP_568665.1
  • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18940903..18942672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124038.4 → NP_568665.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568665.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56XR6, Q8LFY9, Q9FIQ7
    UniProtKB/TrEMBL
    A0A178UJI6, A0A5S9YBT8
    Conserved Domains (3) summary
    PLN03077
    Location:40 → 407
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:50 → 77
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:17 → 58
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q56XR6.2

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