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pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834701, updated on 18-Sep-2024

Summary

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Official Full Name
pentatricopeptide (PPR) repeat-containing protein
Primary source
TAIR:AT5G46580
Locus tag
AT5G46580
See related
Araport:AT5G46580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10E10.5; F10E10_5
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (18897445..18899646, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BR-signaling kinase 2 Neighboring gene ncRNA Neighboring gene NAC domain containing protein 96

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PPR-SMR protein SOT1 has RNA endonuclease activity. Zhou W, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28167782, Free PMC Article
  2. SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana. Wu W, et al. Plant J, 2016 Mar. PMID 26800847
  3. CAF Proteins Help SOT1 Regulate the Stability of Chloroplast ndhA Transcripts. Li X, et al. Int J Mol Sci, 2021 Nov 23. PMID 34884441, Free PMC Article
  4. An Arabidopsis pentatricopeptide repeat protein, SUPPRESSOR OF VARIEGATION7, is required for FtsH-mediated chloroplast biogenesis. Liu X, et al. Plant Physiol, 2010 Dec. PMID 20935174, Free PMC Article
  5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124028.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables deoxyribonuclease I activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables mRNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables rRNA endonuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables rRNA primary transcript binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within chloroplast rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ribosome biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pentatricopeptide (PPR) repeat-containing protein
NP_199470.1
  • pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G16390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18897445..18899646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124028.3 → NP_199470.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199470.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LS25
    UniProtKB/TrEMBL
    A0A178UPY9, A0A5S9YBJ6
    Conserved Domains (3) summary
    PLN03218
    Location:211 → 515
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:258 → 285
    PPR; PPR repeat [structural motif]
    cl02619
    Location:611 → 691
    Smr; Smr domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LS25.1

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