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Man1-Src1p-carboxy-terminal domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834699, updated on 18-Sep-2024

Summary

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Official Full Name
Man1-Src1p-carboxy-terminal domain protein
Primary source
TAIR:AT5G46560
Locus tag
AT5G46560
See related
Araport:AT5G46560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10E10.3; F10E10_3
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (18887987..18890517)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene P-glycoprotein 7 Neighboring gene DNA-binding bromodomain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PNET2 is a component of the plant nuclear lamina and is required for proper genome organization and activity. Tang Y, et al. Dev Cell, 2022 Jan 10. PMID 34822788
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124026.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear periphery IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Man1-Src1p-carboxy-terminal domain protein
NP_199468.5
  • CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18887987..18890517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124026.6 → NP_199468.5  Man1-Src1p-carboxy-terminal domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199468.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YDW9, A0A654G8U3, F4KHI7
    Conserved Domains (1) summary
    pfam09402
    Location:77 → 343
    MSC; Man1-Src1p-C-terminal domain
Nucleotide Protein
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