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DNA-binding bromodomain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834698, updated on 18-Sep-2024

Summary

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Official Full Name
DNA-binding bromodomain-containing protein
Primary source
TAIR:AT5G46550
Locus tag
AT5G46550
See related
Araport:AT5G46550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10E10.2; F10E10_2
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (18884218..18886960, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AWPM-19-like family protein Neighboring gene P-glycoprotein 7 Neighboring gene Man1-Src1p-carboxy-terminal domain protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124025.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA-binding bromodomain-containing protein
NP_199467.2
  • DNA-binding bromodomain-containing protein; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 9 (TAIR:AT5G14270.1); Has 6307 Blast hits to 5240 proteins in 258 species: Archae - 2; Bacteria - 6; Metazoa - 3814; Fungi - 1080; Plants - 634; Viruses - 0; Other Eukaryotes - 771 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18884218..18886960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124025.4 → NP_199467.2  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199467.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXL8, Q9LS28
    UniProtKB/TrEMBL
    A0A178USQ6, A0A5S9YBJ7
    Conserved Domains (2) summary
    cd05506
    Location:69 → 167
    Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
    cl26597
    Location:339 → 442
    DUF2058; Uncharacterized protein conserved in bacteria (DUF2058)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LS28.2

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